Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01394.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2792
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29


Found at i:147 original size:19 final size:19

Alignment explanation


    Indices: 123--160  Score: 67
    Period size: 19  Copynumber: 2.0  Consensus size: 19

        113 ACACACATAC

                   *           
        123 AACATATGCAGGTTGAATT
          1 AACATATACAGGTTGAATT

                               
        142 AACATATACAGGTTGAATT
          1 AACATATACAGGTTGAATT

        161 TTCCGATGAA


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  19   18  1.00

ACGTcount: A:0.39, C:0.11, G:0.18, T:0.32


Consensus pattern (19 bp):   
AACATATACAGGTTGAATT
Done.