Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01396.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2978
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29


Found at i:2864 original size:7 final size:7

Alignment explanation


    Indices: 2848--2881  Score: 50
    Period size: 7  Copynumber: 4.9  Consensus size: 7

       2838 AACATTATGC

                   
       2848 TTTGCAG
          1 TTTGCAG

               *   
       2855 TTTTCAG
          1 TTTGCAG

                   
       2862 TTTGCAG
          1 TTTGCAG

                   
       2869 TTTGCAG
          1 TTTGCAG

             *    
       2876 TGTGCA
          1 TTTGCA

       2882 ATATATACAT


Statistics
Matches: 24,  Mismatches: 3, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
   7   24  1.00

ACGTcount: A:0.15, C:0.15, G:0.26, T:0.44


Consensus pattern (7 bp):   
TTTGCAG

Done.