Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01427.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 299

Length: 499
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.26


Found at i:427 original size:20 final size:21

Alignment explanation


    Indices: 402--440  Score: 71
    Period size: 20  Copynumber: 1.9  Consensus size: 21

        392 GGTCTGTTTG

                                 
        402 GGTCTAGTTTAAGT-TGGGCT
          1 GGTCTAGTTTAAGTCTGGGCT

                               
        422 GGTCTAGTTTAAGTCTGGG
          1 GGTCTAGTTTAAGTCTGGG

        441 TTTGCTGGGT


Statistics
Matches: 18,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  20   14  0.78
  21    4  0.22

ACGTcount: A:0.15, C:0.10, G:0.36, T:0.38


Consensus pattern (21 bp):   
GGTCTAGTTTAAGTCTGGGCT
Done.