Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01464.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4114
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34


Found at i:1498 original size:33 final size:33

Alignment explanation


    Indices: 1460--1558  Score: 153
    Period size: 33  Copynumber: 3.0  Consensus size: 33

       1450 GATTGAGTAG

                    *                        
       1460 GAGTGTTTGGTTGCTGGACAGGAGCTGGAATGT
          1 GAGTGTTTTGTTGCTGGACAGGAGCTGGAATGT

                      *     *                
       1493 GAGTGTTTTGCTGCTGTACAGGAGCTGGAATGT
          1 GAGTGTTTTGTTGCTGGACAGGAGCTGGAATGT

             *                    *          
       1526 GGGTGTTTTGTTGCTGGACAGGTGCTGGAATGT
          1 GAGTGTTTTGTTGCTGGACAGGAGCTGGAATGT

       1559 CAAGAAGAAA


Statistics
Matches: 59,  Mismatches: 7, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  33   59  1.00

ACGTcount: A:0.16, C:0.10, G:0.40, T:0.33


Consensus pattern (33 bp):   
GAGTGTTTTGTTGCTGGACAGGAGCTGGAATGT
Done.