Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01469.F12

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4247
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.33


Found at i:1424 original size:12 final size:13

Alignment explanation


    Indices: 1407--1449  Score: 54
    Period size: 12  Copynumber: 3.5  Consensus size: 13

       1397 AGCCACACTT

                         
       1407 TTCTTTCTTT-TG
          1 TTCTTTCTTTCTG

                         
       1419 TTCTTTCTTTCTG
          1 TTCTTTCTTTCTG

                *       *
       1432 TTC-CTCTTTCTC
          1 TTCTTTCTTTCTG

                  
       1444 TTCTTT
          1 TTCTTT

       1450 GGTTTTACTT


Statistics
Matches: 26,  Mismatches: 3, Indels: 3
        0.81            0.09        0.09

Matches are distributed among these distances:
  12   20  0.77
  13    6  0.23

ACGTcount: A:0.00, C:0.26, G:0.05, T:0.70


Consensus pattern (13 bp):   
TTCTTTCTTTCTG

Found at i:1427 original size:16 final size:16

Alignment explanation


    Indices: 1406--1449  Score: 52
    Period size: 16  Copynumber: 2.7  Consensus size: 16

       1396 TAGCCACACT

                        **  
       1406 TTTCTTTCTTTTGTTC
          1 TTTCTTTCTTTTCCTC

                     *      
       1422 TTTCTTTCTGTTCCTC
          1 TTTCTTTCTTTTCCTC

                        
       1438 TTTCTCTTCTTT
          1 TTTCT-TTCTTT

       1450 GGTTTTACTT


Statistics
Matches: 23,  Mismatches: 4, Indels: 1
        0.82            0.14        0.04

Matches are distributed among these distances:
  16   18  0.78
  17    5  0.22

ACGTcount: A:0.00, C:0.25, G:0.05, T:0.70


Consensus pattern (16 bp):   
TTTCTTTCTTTTCCTC
Done.