Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01469.F21

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4340
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.33


Found at i:1620 original size:12 final size:13

Alignment explanation


    Indices: 1603--1645  Score: 54
    Period size: 12  Copynumber: 3.5  Consensus size: 13

       1593 AGCCACACTT

                         
       1603 TTCTTTCTTT-TG
          1 TTCTTTCTTTCTG

                         
       1615 TTCTTTCTTTCTG
          1 TTCTTTCTTTCTG

                *       *
       1628 TTC-CTCTTTCTC
          1 TTCTTTCTTTCTG

                  
       1640 TTCTTT
          1 TTCTTT

       1646 GGTTTTACTT


Statistics
Matches: 26,  Mismatches: 3, Indels: 3
        0.81            0.09        0.09

Matches are distributed among these distances:
  12   20  0.77
  13    6  0.23

ACGTcount: A:0.00, C:0.26, G:0.05, T:0.70


Consensus pattern (13 bp):   
TTCTTTCTTTCTG

Found at i:1623 original size:16 final size:16

Alignment explanation


    Indices: 1602--1645  Score: 52
    Period size: 16  Copynumber: 2.7  Consensus size: 16

       1592 TAGCCACACT

                        **  
       1602 TTTCTTTCTTTTGTTC
          1 TTTCTTTCTTTTCCTC

                     *      
       1618 TTTCTTTCTGTTCCTC
          1 TTTCTTTCTTTTCCTC

                        
       1634 TTTCTCTTCTTT
          1 TTTCT-TTCTTT

       1646 GGTTTTACTT


Statistics
Matches: 23,  Mismatches: 4, Indels: 1
        0.82            0.14        0.04

Matches are distributed among these distances:
  16   18  0.78
  17    5  0.22

ACGTcount: A:0.00, C:0.25, G:0.05, T:0.70


Consensus pattern (16 bp):   
TTTCTTTCTTTTCCTC
Done.