Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01470.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2336
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27


Found at i:373 original size:18 final size:18

Alignment explanation


    Indices: 346--383  Score: 58
    Period size: 18  Copynumber: 2.1  Consensus size: 18

        336 ACTCCAAGGC

                              
        346 GACGACGAAGATGAAGAT
          1 GACGACGAAGATGAAGAT

                 *       *    
        364 GACGATGAAGATGGAGAT
          1 GACGACGAAGATGAAGAT

              
        382 GA
          1 GA

        384 TGAAGATGAT


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.42, C:0.08, G:0.37, T:0.13


Consensus pattern (18 bp):   
GACGACGAAGATGAAGAT
Done.