Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01481.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2354
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.29


Found at i:393 original size:67 final size:67

Alignment explanation


    Indices: 285--421  Score: 274
    Period size: 67  Copynumber: 2.0  Consensus size: 67

        275 CAACAAACTG

                                                                             
        285 CCTTTAACCGGGTAGGGACGATGATCAATATCTTTTCATTAAAACTCTAAACTCTCTGCTGTGTT
          1 CCTTTAACCGGGTAGGGACGATGATCAATATCTTTTCATTAAAACTCTAAACTCTCTGCTGTGTT

              
        350 CC
         66 CC

                                                                             
        352 CCTTTAACCGGGTAGGGACGATGATCAATATCTTTTCATTAAAACTCTAAACTCTCTGCTGTGTT
          1 CCTTTAACCGGGTAGGGACGATGATCAATATCTTTTCATTAAAACTCTAAACTCTCTGCTGTGTT

              
        417 CC
         66 CC

               
        419 CCT
          1 CCT

        422 GCTTTTGATT


Statistics
Matches: 70,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  67   70  1.00

ACGTcount: A:0.25, C:0.25, G:0.16, T:0.34


Consensus pattern (67 bp):   
CCTTTAACCGGGTAGGGACGATGATCAATATCTTTTCATTAAAACTCTAAACTCTCTGCTGTGTT
CC

Found at i:438 original size:3 final size:3

Alignment explanation


    Indices: 430--469  Score: 80
    Period size: 3  Copynumber: 13.3  Consensus size: 3

        420 CTGCTTTTGA

                                                                 
        430 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
          1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T

        470 GAATGTTGTT


Statistics
Matches: 37,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   37  1.00

ACGTcount: A:0.00, C:0.33, G:0.00, T:0.68


Consensus pattern (3 bp):   
TTC

Done.