Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01485.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1921
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.33


Found at i:1109 original size:11 final size:11

Alignment explanation


    Indices: 1093--1122  Score: 60
    Period size: 11  Copynumber: 2.7  Consensus size: 11

       1083 TGGGTATTGG

                       
       1093 GCTGATGGTTA
          1 GCTGATGGTTA

                       
       1104 GCTGATGGTTA
          1 GCTGATGGTTA

                    
       1115 GCTGATGG
          1 GCTGATGG

       1123 GTAAATTTGG


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   19  1.00

ACGTcount: A:0.17, C:0.10, G:0.40, T:0.33


Consensus pattern (11 bp):   
GCTGATGGTTA

Found at i:1179 original size:21 final size:19

Alignment explanation


    Indices: 1145--1196  Score: 59
    Period size: 21  Copynumber: 2.5  Consensus size: 19

       1135 TTAATTTGTA

                               
       1145 TTGGGTTTGTAGGTTTAAT
          1 TTGGGTTTGTAGGTTTAAT

                                * 
       1164 TTGGGTTTGGGTAGGTTTAGTT
          1 TTGGGTTT--GTAGGTTTA-AT

                       
       1186 ATTGGGTTTGT
          1 -TTGGGTTTGT

       1197 TGTATTGGGT


Statistics
Matches: 28,  Mismatches: 1, Indels: 6
        0.80            0.03        0.17

Matches are distributed among these distances:
  19    8  0.29
  21   11  0.39
  22    1  0.04
  23    8  0.29

ACGTcount: A:0.12, C:0.00, G:0.37, T:0.52


Consensus pattern (19 bp):   
TTGGGTTTGTAGGTTTAAT
Done.