Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01495.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1721
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29


Found at i:1487 original size:3 final size:3

Alignment explanation


    Indices: 1479--1548  Score: 68
    Period size: 3  Copynumber: 23.3  Consensus size: 3

       1469 AGCCAAGTCA

                                 *       *          *   *   *   *          
       1479 ATG ATG ATG ATG ATG ACG ATG AGG ATG ATG GTG GTG GTG GTG ATG ATG
          1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG

                        *        *       
       1527 ATG ATG ATG TTG ATG AAG ATG A
          1 ATG ATG ATG ATG ATG ATG ATG A

       1549 CCCAGAAGAG


Statistics
Matches: 57,  Mismatches: 10, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
   3   57  1.00

ACGTcount: A:0.29, C:0.01, G:0.40, T:0.30


Consensus pattern (3 bp):   
ATG

Done.