Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01500.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 654

Length: 1091
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.27


Found at i:379 original size:18 final size:18

Alignment explanation


    Indices: 356--391  Score: 72
    Period size: 18  Copynumber: 2.0  Consensus size: 18

        346 TCCTTGAGTT

                              
        356 GTCCCGCTGCGTTTAATG
          1 GTCCCGCTGCGTTTAATG

                              
        374 GTCCCGCTGCGTTTAATG
          1 GTCCCGCTGCGTTTAATG

        392 TTTCCGGTTT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.11, C:0.28, G:0.28, T:0.33


Consensus pattern (18 bp):   
GTCCCGCTGCGTTTAATG
Done.