Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01505.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4644
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.33


Found at i:4289 original size:321 final size:321

Alignment explanation


    Indices: 3707--4347  Score: 1219
    Period size: 321  Copynumber: 2.0  Consensus size: 321

       3697 TCTTCAATCT

                                  *                                          
       3707 CCACTTTCACTTCCTCTTTCTTGAGGCCAGGGAGGTCAGCCTTGAACACATGGGCTTCAGGGGTT
          1 CCACTTTCACTTCCTCTTTCTTAAGGCCAGGGAGGTCAGCCTTGAACACATGGGCTTCAGGGGTT

                                                                             
       3772 TCTTTCCAGTCCATCCGGGCGCTCAAAAAAGCCGAGCTTTCCGCGTTACGAGTTGTGAGTGAAGA
         66 TCTTTCCAGTCCATCCGGGCGCTCAAAAAAGCCGAGCTTTCCGCGTTACGAGTTGTGAGTGAAGA

                                                                             
       3837 AAGGAATGGGAACTCCTTGAAAGGATCCCAAAGGTCCAGAGAGAAGGGATCCAAGATGCTGCAGC
        131 AAGGAATGGGAACTCCTTGAAAGGATCCCAAAGGTCCAGAGAGAAGGGATCCAAGATGCTGCAGC

                                                                             
       3902 CCCTACGATTGCCAAACAAACTTGGGATCATCGCCATATCTTTATTTCTTGATAAAGAGTAGCTG
        196 CCCTACGATTGCCAAACAAACTTGGGATCATCGCCATATCTTTATTTCTTGATAAAGAGTAGCTG

                          *                                              
       3967 AATGCTGATGAAATTGCTTGGAATCAACTTCTTTTTTGTTGAGGTAGGAGGCGTAGGCTTG
        261 AATGCTGATGAAATCGCTTGGAATCAACTTCTTTTTTGTTGAGGTAGGAGGCGTAGGCTTG

                           *                                                 
       4028 CCACTTTCACTTCCTTTTTCTTAAGGCCAGGGAGGTCAGCCTTGAACACATGGGCTTCAGGGGTT
          1 CCACTTTCACTTCCTCTTTCTTAAGGCCAGGGAGGTCAGCCTTGAACACATGGGCTTCAGGGGTT

                                     *                                       
       4093 TCTTTCCAGTCCATCCGGGCGCTCACAAAAGCCGAGCTTTCCGCGTTACGAGTTGTGAGTGAAGA
         66 TCTTTCCAGTCCATCCGGGCGCTCAAAAAAGCCGAGCTTTCCGCGTTACGAGTTGTGAGTGAAGA

             *          *                                                 *  
       4158 AGGGAATGGGAAGTCCTTGAAAGGATCCCAAAGGTCCAGAGAGAAGGGATCCAAGATGCTGCTGC
        131 AAGGAATGGGAACTCCTTGAAAGGATCCCAAAGGTCCAGAGAGAAGGGATCCAAGATGCTGCAGC

                                                                             
       4223 CCCTACGATTGCCAAACAAACTTGGGATCATCGCCATATCTTTATTTCTTGATAAAGAGTAGCTG
        196 CCCTACGATTGCCAAACAAACTTGGGATCATCGCCATATCTTTATTTCTTGATAAAGAGTAGCTG

                                                                        
       4288 AATGCTGATGAAATCGCTTGGAATCAACTTCTTTTTTGTTGAGGTAGGAGGCGTAGGCTT
        261 AATGCTGATGAAATCGCTTGGAATCAACTTCTTTTTTGTTGAGGTAGGAGGCGTAGGCTT

       4348 TCCCAGTATT


Statistics
Matches: 313,  Mismatches: 7, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
 321  313  1.00

ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27


Consensus pattern (321 bp):   
CCACTTTCACTTCCTCTTTCTTAAGGCCAGGGAGGTCAGCCTTGAACACATGGGCTTCAGGGGTT
TCTTTCCAGTCCATCCGGGCGCTCAAAAAAGCCGAGCTTTCCGCGTTACGAGTTGTGAGTGAAGA
AAGGAATGGGAACTCCTTGAAAGGATCCCAAAGGTCCAGAGAGAAGGGATCCAAGATGCTGCAGC
CCCTACGATTGCCAAACAAACTTGGGATCATCGCCATATCTTTATTTCTTGATAAAGAGTAGCTG
AATGCTGATGAAATCGCTTGGAATCAACTTCTTTTTTGTTGAGGTAGGAGGCGTAGGCTTG
Done.