Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01507.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3160
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.28


Found at i:977 original size:9 final size:9

Alignment explanation


    Indices: 963--990  Score: 56
    Period size: 9  Copynumber: 3.1  Consensus size: 9

        953 CACATTCACC

                     
        963 GGGTAAAAA
          1 GGGTAAAAA

                     
        972 GGGTAAAAA
          1 GGGTAAAAA

                     
        981 GGGTAAAAA
          1 GGGTAAAAA

             
        990 G
          1 G

        991 AAGAGTCTCA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   19  1.00

ACGTcount: A:0.54, C:0.00, G:0.36, T:0.11


Consensus pattern (9 bp):   
GGGTAAAAA

Found at i:1354 original size:15 final size:15

Alignment explanation


    Indices: 1336--1379  Score: 52
    Period size: 15  Copynumber: 2.9  Consensus size: 15

       1326 TCCTGGAAGA

                 *         
       1336 CCAGCTCCTCCTCCT
          1 CCAGCACCTCCTCCT

                    *      
       1351 CCAGCACCACCTCCT
          1 CCAGCACCTCCTCCT

            * *           
       1366 GCTGCACCTCCTCC
          1 CCAGCACCTCCTCC

       1380 CAAAGCAGCA


Statistics
Matches: 24,  Mismatches: 5, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  15   24  1.00

ACGTcount: A:0.11, C:0.59, G:0.09, T:0.20


Consensus pattern (15 bp):   
CCAGCACCTCCTCCT
Done.