Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01510.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 549

Length: 916
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.30


Found at i:469 original size:30 final size:30

Alignment explanation


    Indices: 435--508  Score: 139
    Period size: 30  Copynumber: 2.5  Consensus size: 30

        425 GTCTACGCCA

                                          
        435 CCATCGGCATCTCCTTCTCCTTCCTCTCCG
          1 CCATCGGCATCTCCTTCTCCTTCCTCTCCG

                                          
        465 CCATCGGCATCTCCTTCTCCTTCCTCTCCG
          1 CCATCGGCATCTCCTTCTCCTTCCTCTCCG

                 *        
        495 CCATCTGCATCTCC
          1 CCATCGGCATCTCC

        509 GGCTCCGGAA


Statistics
Matches: 43,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  30   43  1.00

ACGTcount: A:0.08, C:0.50, G:0.09, T:0.32


Consensus pattern (30 bp):   
CCATCGGCATCTCCTTCTCCTTCCTCTCCG

Done.