Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01512.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 653

Length: 1089
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30


Found at i:1014 original size:18 final size:18

Alignment explanation


    Indices: 988--1024  Score: 56
    Period size: 18  Copynumber: 2.1  Consensus size: 18

        978 CACGTTTGAA

                *             
        988 CTTTTTTTCTTTTTCTTT
          1 CTTTCTTTCTTTTTCTTT

                          *   
       1006 CTTTCTTTCTTTTTTTTT
          1 CTTTCTTTCTTTTTCTTT

             
       1024 C
          1 C

       1025 ACTGGAGGAA


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  18   17  1.00

ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81


Consensus pattern (18 bp):   
CTTTCTTTCTTTTTCTTT
Done.