Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01512.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 772

Length: 1287
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32


Found at i:1212 original size:18 final size:18

Alignment explanation


    Indices: 1186--1222  Score: 56
    Period size: 18  Copynumber: 2.1  Consensus size: 18

       1176 CACGTTTGAA

                *             
       1186 CTTTTTTTCTTTTTCTTT
          1 CTTTCTTTCTTTTTCTTT

                          *   
       1204 CTTTCTTTCTTTTTTTTT
          1 CTTTCTTTCTTTTTCTTT

             
       1222 C
          1 C

       1223 ACTGGAGGAA


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  18   17  1.00

ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81


Consensus pattern (18 bp):   
CTTTCTTTCTTTTTCTTT
Done.