Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01528.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5001
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30


Found at i:4276 original size:23 final size:23

Alignment explanation


    Indices: 4246--4291  Score: 83
    Period size: 23  Copynumber: 2.0  Consensus size: 23

       4236 ATTATTTCCT

                                   
       4246 TCAATGAATTGAGCTTCTACCTG
          1 TCAATGAATTGAGCTTCTACCTG

                       *           
       4269 TCAATGAATTGGGCTTCTACCTG
          1 TCAATGAATTGAGCTTCTACCTG

       4292 ATTTTTTCAC


Statistics
Matches: 22,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  23   22  1.00

ACGTcount: A:0.24, C:0.22, G:0.20, T:0.35


Consensus pattern (23 bp):   
TCAATGAATTGAGCTTCTACCTG
Done.