Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01529.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1845
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.29


Found at i:152 original size:17 final size:17

Alignment explanation


    Indices: 130--166  Score: 74
    Period size: 17  Copynumber: 2.2  Consensus size: 17

        120 CCTTACCTAC

                             
        130 TCTAATTAACCTTTTTG
          1 TCTAATTAACCTTTTTG

                             
        147 TCTAATTAACCTTTTTG
          1 TCTAATTAACCTTTTTG

               
        164 TCT
          1 TCT

        167 TTTTCACTTC


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   20  1.00

ACGTcount: A:0.22, C:0.19, G:0.05, T:0.54


Consensus pattern (17 bp):   
TCTAATTAACCTTTTTG
Done.