Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01549.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4313
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.35


Found at i:4083 original size:47 final size:47

Alignment explanation


    Indices: 4029--4124  Score: 192
    Period size: 47  Copynumber: 2.0  Consensus size: 47

       4019 GACCTTGTAA

                                                           
       4029 GAGTATTTGATATTGTTATTGGCTAACCGAGAGATCAAATGTTTGTT
          1 GAGTATTTGATATTGTTATTGGCTAACCGAGAGATCAAATGTTTGTT

                                                           
       4076 GAGTATTTGATATTGTTATTGGCTAACCGAGAGATCAAATGTTTGTT
          1 GAGTATTTGATATTGTTATTGGCTAACCGAGAGATCAAATGTTTGTT

              
       4123 GA
          1 GA

       4125 ACCCATTGTT


Statistics
Matches: 49,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  47   49  1.00

ACGTcount: A:0.28, C:0.08, G:0.24, T:0.40


Consensus pattern (47 bp):   
GAGTATTTGATATTGTTATTGGCTAACCGAGAGATCAAATGTTTGTT
Done.