Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01557.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2561
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.28


Found at i:89 original size:35 final size:34

Alignment explanation


    Indices: 18--150  Score: 149
    Period size: 35  Copynumber: 3.8  Consensus size: 34

          8 GCAAACCTAT

                            *              *  
         18 TGCATCTGCCGTCCACTGCCTGCCCAGCCACTGG
          1 TGCATCTGCCGTCCACCGCCTGCCCAGCCACCGG

                    **                      *  
         52 TGCATCTGTTGTCCACCGCCTGCCCAAGCCACGGG
          1 TGCATCTGCCGTCCACCGCCTGCCC-AGCCACCGG

                 *   *      *        *         
         87 TGCATTTGCTGTCCACTGCCTGCCTTAGCCACCGG
          1 TGCATCTGCCGTCCACCGCCTGCC-CAGCCACCGG

                             *           
        122 TGCATCTGCCGTCCACCACCTGCTCCAGC
          1 TGCATCTGCCGTCCACCGCCTGC-CCAGC

        151 TACTGGTAAA


Statistics
Matches: 82,  Mismatches: 14, Indels: 5
        0.81            0.14        0.05

Matches are distributed among these distances:
  34   22  0.27
  35   59  0.72
  36    1  0.01

ACGTcount: A:0.13, C:0.42, G:0.23, T:0.23


Consensus pattern (34 bp):   
TGCATCTGCCGTCCACCGCCTGCCCAGCCACCGG
Done.