Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01585.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3457
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33


Found at i:1895 original size:266 final size:266

Alignment explanation


    Indices: 1421--1956  Score: 1018
    Period size: 266  Copynumber: 2.0  Consensus size: 266

       1411 TGTACATGAC

                                            *                *               
       1421 TTTTGCTTGATAAATACAGCAAGTGATGCATAGCATCTAATGTGCCAGTTTGCTCATTGCAACTC
          1 TTTTGCTTGATAAATACAGCAAGTGATGCATAACATCTAATGTGCCAGTGTGCTCATTGCAACTC

                                                                             
       1486 TGACTTTGAGTGTTGGTCCTTAACATGTGTTTATCCCATTTTATCATGTCAATGAATTTCTGAAG
         66 TGACTTTGAGTGTTGGTCCTTAACATGTGTTTATCCCATTTTATCATGTCAATGAATTTCTGAAG

                   *                     *                                   
       1551 ATTTTAGGGTTTTAAATGAAGATTTACTATTGAGTATTATTCTGAAGACTTGAAACCTTTTACAT
        131 ATTTTAGAGTTTTAAATGAAGATTTACTAGTGAGTATTATTCTGAAGACTTGAAACCTTTTACAT

                                                                             
       1616 GGTTTTCAATTGACTTTTAAGTTTGACATGCACATAGAAAATTTTCTGTGAATAACATTGAACTT
        196 GGTTTTCAATTGACTTTTAAGTTTGACATGCACATAGAAAATTTTCTGTGAATAACATTGAACTT

                  
       1681 CACATA
        261 CACATA

                                *                                            
       1687 TTTTGCTTGATAAATACAGCCAGTGATGCATAACATCTAATGTGCCAGTGTGCTCATTGCAACTC
          1 TTTTGCTTGATAAATACAGCAAGTGATGCATAACATCTAATGTGCCAGTGTGCTCATTGCAACTC

               *                                                             
       1752 TGATTTTGAGTGTTGGTCCTTAACATGTGTTTATCCCATTTTATCATGTCAATGAATTTCTGAAG
         66 TGACTTTGAGTGTTGGTCCTTAACATGTGTTTATCCCATTTTATCATGTCAATGAATTTCTGAAG

                                                                             
       1817 ATTTTAGAGTTTTAAATGAAGATTTACTAGTGAGTATTATTCTGAAGACTTGAAACCTTTTACAT
        131 ATTTTAGAGTTTTAAATGAAGATTTACTAGTGAGTATTATTCTGAAGACTTGAAACCTTTTACAT

                                                                             
       1882 GGTTTTCAATTGACTTTTAAGTTTGACATGCACATAGAAAATTTTCTGTGAATAACATTGAACTT
        196 GGTTTTCAATTGACTTTTAAGTTTGACATGCACATAGAAAATTTTCTGTGAATAACATTGAACTT

                  
       1947 CACATA
        261 CACATA

                
       1953 TTTT
          1 TTTT

       1957 CCTTCTAGAA


Statistics
Matches: 264,  Mismatches: 6, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
 266  264  1.00

ACGTcount: A:0.29, C:0.15, G:0.16, T:0.40


Consensus pattern (266 bp):   
TTTTGCTTGATAAATACAGCAAGTGATGCATAACATCTAATGTGCCAGTGTGCTCATTGCAACTC
TGACTTTGAGTGTTGGTCCTTAACATGTGTTTATCCCATTTTATCATGTCAATGAATTTCTGAAG
ATTTTAGAGTTTTAAATGAAGATTTACTAGTGAGTATTATTCTGAAGACTTGAAACCTTTTACAT
GGTTTTCAATTGACTTTTAAGTTTGACATGCACATAGAAAATTTTCTGTGAATAACATTGAACTT
CACATA
Done.