Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01586.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3165
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.34


Found at i:1365 original size:12 final size:12

Alignment explanation


    Indices: 1348--1373  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

       1338 TAAAGATGAC

                        
       1348 TTATTATAATAT
          1 TTATTATAATAT

                        
       1360 TTATTATAATAT
          1 TTATTATAATAT

              
       1372 TT
          1 TT

       1374 TCTCACTTGT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62


Consensus pattern (12 bp):   
TTATTATAATAT
Done.