Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01590.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3357
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29


Found at i:3080 original size:6 final size:6

Alignment explanation


    Indices: 3071--3103  Score: 66
    Period size: 6  Copynumber: 5.5  Consensus size: 6

       3061 GATTAAGACA

                                                  
       3071 GAGATG GAGATG GAGATG GAGATG GAGATG GAG
          1 GAGATG GAGATG GAGATG GAGATG GAGATG GAG

       3104 GAGATCTGGT


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   27  1.00

ACGTcount: A:0.33, C:0.00, G:0.52, T:0.15


Consensus pattern (6 bp):   
GAGATG

Done.