Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01591.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4197
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28


Found at i:2150 original size:126 final size:126

Alignment explanation


    Indices: 1925--2167  Score: 364
    Period size: 126  Copynumber: 1.9  Consensus size: 126

       1915 TGACCTGCAG

                                                                 *        *  
       1925 AATAAGCAGCAAGATGTTCAGGTTCCTTCACTTGATAGAAAGCTGGGGAAGGATAATTCCCATAG
          1 AATAAGCAGCAAGATGTTCAGGTTCCTTCACTTGATAGAAAGCTGGGGAAGGACAATTCCCACAG

                     *                 *                                  
       1990 CCCTTCTAAGTTGGAAGTGCTTGAAGGTGGAAATGATGAA-TCAGTGACAAAATCAGTTAGC
         66 CCCTTCTAACTTGGAAGTGCTTGAAGGAGGAAATGAT-AAGTCAGTGACAAAATCAGTTAGC

                      *                         *                        *   
       2051 AATAAGCAGCGAGATGTTCAGGTTCCTTCACTTGATGGAAAGCTGGGGAAGGACAATGT-CGACA
          1 AATAAGCAGCAAGATGTTCAGGTTCCTTCACTTGATAGAAAGCTGGGGAAGGACAAT-TCCCACA

                            *   *                      *         
       2115 GCCCTTCTAACTTGGATGTGGTTGAAGGAGGAAATGATAAGTCTGTGACAAAA
         65 GCCCTTCTAACTTGGAAGTGCTTGAAGGAGGAAATGATAAGTCAGTGACAAAA

       2168 CCAATTACCA


Statistics
Matches: 105,  Mismatches: 10, Indels: 4
        0.88            0.08        0.03

Matches are distributed among these distances:
 125    2  0.02
 126  102  0.97
 127    1  0.01

ACGTcount: A:0.33, C:0.16, G:0.27, T:0.25


Consensus pattern (126 bp):   
AATAAGCAGCAAGATGTTCAGGTTCCTTCACTTGATAGAAAGCTGGGGAAGGACAATTCCCACAG
CCCTTCTAACTTGGAAGTGCTTGAAGGAGGAAATGATAAGTCAGTGACAAAATCAGTTAGC
Done.