Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01596.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6341
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.31


Found at i:2778 original size:87 final size:87

Alignment explanation


    Indices: 2632--2800  Score: 329
    Period size: 87  Copynumber: 1.9  Consensus size: 87

       2622 TAAAGTTGCC

                                                                             
       2632 AGAGTACGATTAACCTCTGGGTTTGAAATCACTGCTTATATACCTAGTATTGGCCATAATTCACA
          1 AGAGTACGATTAACCTCTGGGTTTGAAATCACTGCTTATATACCTAGTATTGGCCATAATTCACA

                                  
       2697 AGAACATTCTGTAGTCTTAGTA
         66 AGAACATTCTGTAGTCTTAGTA

                                                         *                   
       2719 AGAGTACGATTAACCTCTGGGTTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTCACA
          1 AGAGTACGATTAACCTCTGGGTTTGAAATCACTGCTTATATACCTAGTATTGGCCATAATTCACA

                             
       2784 AGAACATTCTGTAGTCT
         66 AGAACATTCTGTAGTCT

       2801 GTATTTTTCG


Statistics
Matches: 81,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
  87   81  1.00

ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33


Consensus pattern (87 bp):   
AGAGTACGATTAACCTCTGGGTTTGAAATCACTGCTTATATACCTAGTATTGGCCATAATTCACA
AGAACATTCTGTAGTCTTAGTA
Done.