Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01611.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3784
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30


Found at i:1374 original size:15 final size:15

Alignment explanation


    Indices: 1354--1383  Score: 60
    Period size: 15  Copynumber: 2.0  Consensus size: 15

       1344 AGTTATCATC

                           
       1354 ATATTCCATATTTAA
          1 ATATTCCATATTTAA

                           
       1369 ATATTCCATATTTAA
          1 ATATTCCATATTTAA

       1384 TTTTAGTTAT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.40, C:0.13, G:0.00, T:0.47


Consensus pattern (15 bp):   
ATATTCCATATTTAA
Done.