Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00370.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 645

Length: 1076
ACGTcount: A:0.32, C:0.20, G:0.25, T:0.22


Found at i:29 original size:6 final size:6

Alignment explanation


    Indices: 18--42  Score: 50
    Period size: 6  Copynumber: 4.2  Consensus size: 6

          8 TCTTAAAAAA

                                         
         18 CCAAAG CCAAAG CCAAAG CCAAAG C
          1 CCAAAG CCAAAG CCAAAG CCAAAG C

         43 AAAATCCAAC


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   19  1.00

ACGTcount: A:0.48, C:0.36, G:0.16, T:0.00


Consensus pattern (6 bp):   
CCAAAG

Done.