Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01616.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 721

Length: 1202
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27


Found at i:1197 original size:21 final size:21

Alignment explanation


    Indices: 1150--1190  Score: 73
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1140 AAATCTTTAG

                                 
       1150 ATAGTAATAAAAAGGTCTGCC
          1 ATAGTAATAAAAAGGTCTGCC

                         *      
       1171 ATAGTAATAAAAATGTCTGC
          1 ATAGTAATAAAAAGGTCTGC

       1191 TTGAGTACTT


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   19  1.00

ACGTcount: A:0.44, C:0.12, G:0.17, T:0.27


Consensus pattern (21 bp):   
ATAGTAATAAAAAGGTCTGCC
Done.