Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01642.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2100
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33


Found at i:1353 original size:20 final size:20

Alignment explanation


    Indices: 1328--1368  Score: 82
    Period size: 20  Copynumber: 2.0  Consensus size: 20

       1318 ATATGAGAAA

                                
       1328 ACCATAAGGCTCATAGCTTT
          1 ACCATAAGGCTCATAGCTTT

                                
       1348 ACCATAAGGCTCATAGCTTT
          1 ACCATAAGGCTCATAGCTTT

             
       1368 A
          1 A

       1369 TTTTTTTACA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   21  1.00

ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29


Consensus pattern (20 bp):   
ACCATAAGGCTCATAGCTTT

Found at i:1636 original size:45 final size:46

Alignment explanation


    Indices: 1548--1640  Score: 152
    Period size: 45  Copynumber: 2.0  Consensus size: 46

       1538 GAAATCTTTG

                                                          
       1548 ATCTTCCCAATTTAAAAGATGGGAAATAGAGCTTAGAGAAGTCTCA
          1 ATCTTCCCAATTTAAAAGATGGGAAATAGAGCTTAGAGAAGTCTCA

                    *                         *   *       
       1594 ATCTTCCCTATTTAAAAGAT-GGAAATAGAGCTTGGAGGAGTCTCA
          1 ATCTTCCCAATTTAAAAGATGGGAAATAGAGCTTAGAGAAGTCTCA

              
       1639 AT
          1 AT

       1641 GCTTGCCTTG


Statistics
Matches: 44,  Mismatches: 3, Indels: 1
        0.92            0.06        0.02

Matches are distributed among these distances:
  45   25  0.57
  46   19  0.43

ACGTcount: A:0.37, C:0.15, G:0.20, T:0.28


Consensus pattern (46 bp):   
ATCTTCCCAATTTAAAAGATGGGAAATAGAGCTTAGAGAAGTCTCA
Done.