Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01644.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3036
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.27


Found at i:1619 original size:6 final size:6

Alignment explanation


    Indices: 1605--1685  Score: 108
    Period size: 6  Copynumber: 13.5  Consensus size: 6

       1595 GCAAGCTCGA

                       *      *                    *             * 
       1605 CTCAGG CTCATG CTCATG CTCAGG CTCAGG CTCAAG CTCAGG CTCAAG
          1 CTCAGG CTCAGG CTCAGG CTCAGG CTCAGG CTCAGG CTCAGG CTCAGG

                *      *                          
       1653 CTCAAG CTCAAG CTCAGG CTCAGG CTCAGG CTC
          1 CTCAGG CTCAGG CTCAGG CTCAGG CTCAGG CTC

       1686 GACCCACAAC


Statistics
Matches: 69,  Mismatches: 6, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
   6   69  1.00

ACGTcount: A:0.21, C:0.35, G:0.25, T:0.20


Consensus pattern (6 bp):   
CTCAGG

Done.