Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01659.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1787
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28


Found at i:136 original size:21 final size:21

Alignment explanation


    Indices: 110--150  Score: 82
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        100 AACATATGGC

                                 
        110 TGGAGGGGAGCAGAAAAAGGG
          1 TGGAGGGGAGCAGAAAAAGGG

                                
        131 TGGAGGGGAGCAGAAAAAGG
          1 TGGAGGGGAGCAGAAAAAGG

        151 CTGGCGGTGG


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.39, C:0.05, G:0.51, T:0.05


Consensus pattern (21 bp):   
TGGAGGGGAGCAGAAAAAGGG
Done.