Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01668.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 974

Length: 1624
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28


Found at i:1551 original size:25 final size:25

Alignment explanation


    Indices: 1516--1564  Score: 71
    Period size: 25  Copynumber: 2.0  Consensus size: 25

       1506 GTGCTTGCGA

                                     
       1516 GTTATTCGTGTTCGAATCGTAAAAT
          1 GTTATTCGTGTTCGAATCGTAAAAT

                  *        * *      
       1541 GTTATTTGTGTTCGATTTGTAAAA
          1 GTTATTCGTGTTCGAATCGTAAAA

       1565 CGAAAACCTA


Statistics
Matches: 21,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  25   21  1.00

ACGTcount: A:0.27, C:0.08, G:0.20, T:0.45


Consensus pattern (25 bp):   
GTTATTCGTGTTCGAATCGTAAAAT
Done.