Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01670.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 777

Length: 1296
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.29


Found at i:498 original size:6 final size:6

Alignment explanation


    Indices: 457--481  Score: 50
    Period size: 6  Copynumber: 4.2  Consensus size: 6

        447 GGGAATCGGT

                                         
        457 ATATAC ATATAC ATATAC ATATAC A
          1 ATATAC ATATAC ATATAC ATATAC A

        482 CACATATATA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   19  1.00

ACGTcount: A:0.52, C:0.16, G:0.00, T:0.32


Consensus pattern (6 bp):   
ATATAC

Found at i:926 original size:3 final size:3

Alignment explanation


    Indices: 918--965  Score: 96
    Period size: 3  Copynumber: 16.0  Consensus size: 3

        908 AACACAAACT

                                                                           
        918 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
          1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA

        966 ACCAAATGGA


Statistics
Matches: 45,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   45  1.00

ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00


Consensus pattern (3 bp):   
GAA

Done.