Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01674.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 443

Length: 739
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.31


Found at i:612 original size:27 final size:26

Alignment explanation


    Indices: 575--627  Score: 70
    Period size: 27  Copynumber: 2.0  Consensus size: 26

        565 TGTTAATGCA

                        *  *          
        575 AGTAATTAGTTTTAATCAATTTGAAT
          1 AGTAATTAGTTTCAAACAATTTGAAT

                               *       
        601 AGTAGATTAGTTTCAAACATTTTGAAT
          1 AGTA-ATTAGTTTCAAACAATTTGAAT

        628 CCTTGATTCC


Statistics
Matches: 23,  Mismatches: 3, Indels: 1
        0.85            0.11        0.04

Matches are distributed among these distances:
  26    4  0.17
  27   19  0.83

ACGTcount: A:0.38, C:0.06, G:0.13, T:0.43


Consensus pattern (26 bp):   
AGTAATTAGTTTCAAACAATTTGAAT

Done.