Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01693.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 893

Length: 1489
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.28


Found at i:628 original size:18 final size:18

Alignment explanation


    Indices: 605--650  Score: 58
    Period size: 18  Copynumber: 2.6  Consensus size: 18

        595 TGGGCCATGA

                       *      
        605 TCATGGTCATGGTCACGG
          1 TCATGGTCATGATCACGG

                               
        623 TCATGG-CAATGATCACGG
          1 TCATGGTC-ATGATCACGG

                 *    
        641 TCATGCTCAT
          1 TCATGGTCAT

        651 AGCCATAGCC


Statistics
Matches: 24,  Mismatches: 2, Indels: 4
        0.80            0.07        0.13

Matches are distributed among these distances:
  17    1  0.04
  18   22  0.92
  19    1  0.04

ACGTcount: A:0.22, C:0.24, G:0.26, T:0.28


Consensus pattern (18 bp):   
TCATGGTCATGATCACGG
Done.