Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01724.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 462

Length: 770
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33


Found at i:484 original size:3 final size:3

Alignment explanation


    Indices: 476--515  Score: 71
    Period size: 3  Copynumber: 13.3  Consensus size: 3

        466 AAAAGTCACT

                                                        *        
        476 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA CCA TCA T
          1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA T

        516 GTTGGGTGTT


Statistics
Matches: 35,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   3   35  1.00

ACGTcount: A:0.33, C:0.35, G:0.00, T:0.33


Consensus pattern (3 bp):   
TCA

Done.