Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01740.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 615

Length: 1026
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35


Found at i:805 original size:16 final size:17

Alignment explanation


    Indices: 784--818  Score: 63
    Period size: 16  Copynumber: 2.1  Consensus size: 17

        774 CTTTGGATAT

                             
        784 CTAAATCCCGG-TAATG
          1 CTAAATCCCGGTTAATG

                             
        800 CTAAATCCCGGTTAATG
          1 CTAAATCCCGGTTAATG

              
        817 CT
          1 CT

        819 CCATTGTTGC


Statistics
Matches: 18,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  16   11  0.61
  17    7  0.39

ACGTcount: A:0.29, C:0.26, G:0.17, T:0.29


Consensus pattern (17 bp):   
CTAAATCCCGGTTAATG

Done.