Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00372.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 538

Length: 898
ACGTcount: A:0.33, C:0.12, G:0.20, T:0.35


Found at i:592 original size:18 final size:18

Alignment explanation


    Indices: 540--592  Score: 70
    Period size: 18  Copynumber: 2.9  Consensus size: 18

        530 GTTTGCTACG

                  *         * 
        540 GAATAATTGACTGTTACT
          1 GAATAAATGACTGTTATT

                              
        558 GAATAAATGACTGTTATT
          1 GAATAAATGACTGTTATT

             *    *          
        576 GTATAACTGACTGTTAT
          1 GAATAAATGACTGTTAT

        593 AGAGCAACTG


Statistics
Matches: 31,  Mismatches: 4, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  18   31  1.00

ACGTcount: A:0.34, C:0.09, G:0.17, T:0.40


Consensus pattern (18 bp):   
GAATAAATGACTGTTATT
Done.