Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01763.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 782

Length: 1304
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.29


Found at i:1192 original size:19 final size:19

Alignment explanation


    Indices: 1151--1193  Score: 50
    Period size: 19  Copynumber: 2.3  Consensus size: 19

       1141 GCAAAAATGC

                *      *     **
       1151 TTTTATTTTTATTTTTATT
          1 TTTTTTTTTTAATTTTAAA

                               
       1170 TTTTTTTTTTAATTTTAAA
          1 TTTTTTTTTTAATTTTAAA

                 
       1189 TTTTT
          1 TTTTT

       1194 GTTGAGAAGG


Statistics
Matches: 20,  Mismatches: 4, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  19   20  1.00

ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81


Consensus pattern (19 bp):   
TTTTTTTTTTAATTTTAAA
Done.