Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01769.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1681
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.27


Found at i:25 original size:12 final size:12

Alignment explanation


    Indices: 8--34  Score: 54
    Period size: 12  Copynumber: 2.2  Consensus size: 12

          1 AATTTAA

                        
          8 AAATTAAAAAAT
          1 AAATTAAAAAAT

                        
         20 AAATTAAAAAAT
          1 AAATTAAAAAAT

               
         32 AAA
          1 AAA

         35 AAAATCCTCT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   15  1.00

ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22


Consensus pattern (12 bp):   
AAATTAAAAAAT

Found at i:29 original size:20 final size:20

Alignment explanation


    Indices: 1--39  Score: 60
    Period size: 20  Copynumber: 1.9  Consensus size: 20

                *      *        
          1 AATTTAAAAATTAAAAAATA
          1 AATTAAAAAATAAAAAAATA

                               
         21 AATTAAAAAATAAAAAAAT
          1 AATTAAAAAATAAAAAAAT

         40 CCTCTCAACT


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  20   17  1.00

ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26


Consensus pattern (20 bp):   
AATTAAAAAATAAAAAAATA
Done.