Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01776.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2059
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.32


Found at i:628 original size:14 final size:14

Alignment explanation


    Indices: 609--641  Score: 57
    Period size: 14  Copynumber: 2.4  Consensus size: 14

        599 TGAGGTTGAC

                          
        609 TCTTTCAAAAGAAG
          1 TCTTTCAAAAGAAG

                  *       
        623 TCTTTCGAAAGAAG
          1 TCTTTCAAAAGAAG

                 
        637 TCTTT
          1 TCTTT

        642 GAAGTGTAGT


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  14   18  1.00

ACGTcount: A:0.33, C:0.15, G:0.15, T:0.36


Consensus pattern (14 bp):   
TCTTTCAAAAGAAG
Done.