Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01776.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1829
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31


Found at i:398 original size:14 final size:14

Alignment explanation


    Indices: 379--411  Score: 57
    Period size: 14  Copynumber: 2.4  Consensus size: 14

        369 TGAGGTTGAC

                          
        379 TCTTTCAAAAGAAG
          1 TCTTTCAAAAGAAG

                  *       
        393 TCTTTCGAAAGAAG
          1 TCTTTCAAAAGAAG

                 
        407 TCTTT
          1 TCTTT

        412 GAAGTGTAGT


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  14   18  1.00

ACGTcount: A:0.33, C:0.15, G:0.15, T:0.36


Consensus pattern (14 bp):   
TCTTTCAAAAGAAG
Done.