Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01791.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3312
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.31


Found at i:122 original size:21 final size:22

Alignment explanation


    Indices: 89--129  Score: 57
    Period size: 21  Copynumber: 1.9  Consensus size: 22

         79 TTTTATAGAG

                           *      
         89 AAAATCTTAGGTTTTTACAAGA
          1 AAAATCTTAGGTTTTAACAAGA

                    *           
        111 AAAATC-TGGGTTTTAACAA
          1 AAAATCTTAGGTTTTAACAA

        130 ATCATCTTAT


Statistics
Matches: 17,  Mismatches: 2, Indels: 1
        0.85            0.10        0.05

Matches are distributed among these distances:
  21   11  0.65
  22    6  0.35

ACGTcount: A:0.41, C:0.10, G:0.15, T:0.34


Consensus pattern (22 bp):   
AAAATCTTAGGTTTTAACAAGA
Done.