Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01816.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3385
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.30


Found at i:78 original size:35 final size:35

Alignment explanation


    Indices: 32--112  Score: 153
    Period size: 35  Copynumber: 2.3  Consensus size: 35

         22 TCTGCCCTAT

                                     *         
         32 TCCAGCCACTGGTGCATCTGCCGTCGACCACCTGC
          1 TCCAGCCACTGGTGCATCTGCCGTCCACCACCTGC

                                               
         67 TCCAGCCACTGGTGCATCTGCCGTCCACCACCTGC
          1 TCCAGCCACTGGTGCATCTGCCGTCCACCACCTGC

                       
        102 TCCAGCCACTG
          1 TCCAGCCACTG

        113 CATGCTCAAA


Statistics
Matches: 45,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  35   45  1.00

ACGTcount: A:0.15, C:0.44, G:0.21, T:0.20


Consensus pattern (35 bp):   
TCCAGCCACTGGTGCATCTGCCGTCCACCACCTGC

Done.