Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01828.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 933

Length: 1556
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35


Found at i:47 original size:2 final size:2

Alignment explanation


    Indices: 35--65  Score: 53
    Period size: 2  Copynumber: 15.5  Consensus size: 2

         25 GTTTTCTTCT

                  *                                       
         35 TC TC CC TC TC TC TC TC TC TC TC TC TC TC TC T
          1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T

         66 TTGCTCTGTT


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   2   27  1.00

ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48


Consensus pattern (2 bp):   
TC

Done.