Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01832.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3168
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28


Found at i:114 original size:42 final size:42

Alignment explanation


    Indices: 52--143  Score: 139
    Period size: 42  Copynumber: 2.2  Consensus size: 42

         42 TGGATACCCG

                           *                          
         52 CCACCACCAAATCAAGATCCATATCCACCTACGTCGTATCAA
          1 CCACCACCAAATCAACATCCATATCCACCTACGTCGTATCAA

              *                        *   *  *       
         94 CCGCCACCAAATCAACATCCATATCCATCTATGTTGTATCAA
          1 CCACCACCAAATCAACATCCATATCCACCTACGTCGTATCAA

                    
        136 CCACCACC
          1 CCACCACC

        144 TCAATACGCT


Statistics
Matches: 44,  Mismatches: 6, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  42   44  1.00

ACGTcount: A:0.34, C:0.39, G:0.07, T:0.21


Consensus pattern (42 bp):   
CCACCACCAAATCAACATCCATATCCACCTACGTCGTATCAA
Done.