Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01835.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2467
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27


Found at i:2380 original size:21 final size:21

Alignment explanation


    Indices: 2354--2396  Score: 68
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       2344 TTTGCCTATG

                      *          
       2354 TCCCATAATGGTTCAAAATCC
          1 TCCCATAATGATTCAAAATCC

                   *             
       2375 TCCCATAGTGATTCAAAATCC
          1 TCCCATAATGATTCAAAATCC

             
       2396 T
          1 T

       2397 TGAGATGAAC


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.33, C:0.28, G:0.09, T:0.30


Consensus pattern (21 bp):   
TCCCATAATGATTCAAAATCC
Done.