Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01865.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3344
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31


Found at i:1211 original size:13 final size:12

Alignment explanation


    Indices: 1189--1221  Score: 59
    Period size: 12  Copynumber: 2.8  Consensus size: 12

       1179 TATGCTTTAC

                        
       1189 TTTTTCTTTTTT
          1 TTTTTCTTTTTT

                        
       1201 TTTTTCTTTTTT
          1 TTTTTCTTTTTT

                      
       1213 TTTTT-TTTT
          1 TTTTTCTTTT

       1222 GGGCGTAGCT


Statistics
Matches: 21,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  11    4  0.19
  12   17  0.81

ACGTcount: A:0.00, C:0.06, G:0.00, T:0.94


Consensus pattern (12 bp):   
TTTTTCTTTTTT

Found at i:1211 original size:18 final size:17

Alignment explanation


    Indices: 1188--1221  Score: 59
    Period size: 17  Copynumber: 1.9  Consensus size: 17

       1178 ATATGCTTTA

                              
       1188 CTTTTTCTTTTTTTTTTT
          1 CTTTTT-TTTTTTTTTTT

                            
       1206 CTTTTTTTTTTTTTTT
          1 CTTTTTTTTTTTTTTT

       1222 GGGCGTAGCT


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  17   10  0.62
  18    6  0.38

ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91


Consensus pattern (17 bp):   
CTTTTTTTTTTTTTTTT
Done.