Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01868.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3115
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.37


Found at i:311 original size:29 final size:29

Alignment explanation


    Indices: 274--331  Score: 116
    Period size: 29  Copynumber: 2.0  Consensus size: 29

        264 GAAATCATGT

                                         
        274 TTTGCAGCTTCTGTAAATTGGGTTTGTTA
          1 TTTGCAGCTTCTGTAAATTGGGTTTGTTA

                                         
        303 TTTGCAGCTTCTGTAAATTGGGTTTGTTA
          1 TTTGCAGCTTCTGTAAATTGGGTTTGTTA

        332 GAACCTTTGA


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  29   29  1.00

ACGTcount: A:0.17, C:0.10, G:0.24, T:0.48


Consensus pattern (29 bp):   
TTTGCAGCTTCTGTAAATTGGGTTTGTTA

Found at i:2309 original size:16 final size:16

Alignment explanation


    Indices: 2288--2320  Score: 57
    Period size: 16  Copynumber: 2.1  Consensus size: 16

       2278 GCAAAGCTAG

                       *    
       2288 TGAGGCATACATTTGA
          1 TGAGGCATACACTTGA

                            
       2304 TGAGGCATACACTTGA
          1 TGAGGCATACACTTGA

             
       2320 T
          1 T

       2321 ATAAAATATT


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.30, C:0.15, G:0.24, T:0.30


Consensus pattern (16 bp):   
TGAGGCATACACTTGA
Done.