Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01879.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 911

Length: 1519
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34


Found at i:727 original size:19 final size:19

Alignment explanation


    Indices: 703--761  Score: 109
    Period size: 19  Copynumber: 3.1  Consensus size: 19

        693 AAAGGGGAGA

                               
        703 TTGACATGAATGTCAAATG
          1 TTGACATGAATGTCAAATG

                               
        722 TTGACATGAATGTCAAATG
          1 TTGACATGAATGTCAAATG

                        *      
        741 TTGACATGAATGACAAATG
          1 TTGACATGAATGTCAAATG

              
        760 TT
          1 TT

        762 TGGCAATGAA


Statistics
Matches: 39,  Mismatches: 1, Indels: 0
        0.98            0.03        0.00

Matches are distributed among these distances:
  19   39  1.00

ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32


Consensus pattern (19 bp):   
TTGACATGAATGTCAAATG
Done.